Spring Fever Friday Fun: Bubbles

On March 2, 2012 we were dealing with 8 inches of snow around here. Today the Chorus Frogs are calling, the red-winged black birds are staking out their territory, and the finches and robins are fighting over last year’s nests. People are biking to work; kids have shed their snow pants and boots. The high today for Southern Wisconsin? A balmy 77°F. Perfect for playing with bubbles. Spring has sprung. Actually, it feels a little like summer, and all of us here at Promega Connections are suffering from spring fever. So to celebrate here’s a video about bubblology, with a bubble recipe and instructions for making an awesome bubble rod. Have fun!

[youtube http://www.youtube.com/watch?v=w9ASVgO9U6k&w=560&h=315]

Red Rover, Red Rover

[wpvideo j5SvPhHA]On November 26, NASA launched the Mars Science Laboratory from Cape Canaveral. The science laboratory contains the newest Mars rover, Curiosity. NASA has already received the first signal from the laboratory, shortly after it separated from the rocket. The Mars Science Laboratory is flying free toward the red planet.

NASA has a wonderful video describing how the science laboratory landing is planned. The video illustrates just how complex a mission this is. To think that we can even imagine, must less carry out, such a feat of technology and engineering is amazing. Enjoy the video, and let’s hope that on August 6, 2012, Curiosity will land safely and begin teaching us more about our neighboring planet.

If you have difficulty with the embedded video, here’s a link to the video on the NASA website.

Screening for Drug-Drug Interactions with PXR and CYP450 3A4 Activation

The pregnane X receptor (PXR) is a nuclear receptor known to regulate expression of cytochrome P450 (CYP450) drug-metabolizing enzymes (1). PXR has even been designated the “master xenosensor” due to its ability to upregulate cellular levels of a variety of drug-metabolizing enzymes in response to drugs and foreign chemicals. Elevated levels of CYP450 enzymes can elicit alterations in the pharmacokinetics of co-administered drugs, which can result in adverse drug-drug interactions (DDI) or diminished bioavailability. By assessing PXR activation and CYP450 enzyme induction early in the drug development process, many companies hope to reduce late-stage clinical failures and minimize the high costs associated with bringing a new drug to market.

Proportion of drugs metabolized by different CYPs

A paper by Shukla et al. (2) examined over 2,800 clinically used drugs for their ability to activate human PXR (hPXR) and rat PXR (rPXR), induce human cytochrome P450 3A4 enzyme (CYP3A4) at the cellular level, and bind hPXR at the protein level. Several studies have identified PXR as playing a key role in regulating the expression of CYP3A4, an enzyme involved in the metabolism of more than 50% of all drugs prescribed in humans. Since PXR activation and CYP3A4 induction have an impact on drug metabolism and pharmacokinetics, the authors wanted to obtain data that would be valuable in understanding structure-activity relationships (SARs), the connection between chemical structure and biological activity, when prioritizing new molecular entities (NMEs) for further in vitro and in vivo studies.

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Troubleshooting T-Vector Cloning

Why do few of my pGEM®-T or pGEM®-T Easy Vector clones contain the PCR product of interest?

There are several possible reasons why the PCR product may not be recovered after ligation, bacterial transformation and plating when using the pGEM®-T or pGEM®-T Easy Vector Systems.

The PCR fragment may not be A-tailed. Without the A overhangs, the PCR product cannot be ligated into a T vector. Use a nonproofreading DNA polymerase like GoTaq® DNA Polymerase for PCR. If a proofreading DNA polymerase is used, A overhangs will need to be added. Purify the PCR fragment, and set up an A-tailing reaction (see the pGEM®-T and pGEM®-T Easy Vector Systems Technical Manual #TM042). The A-tailed product can be added directly to the ligation as described in the pGEM®-T or pGEM®-T Easy Vector protocol.

The insert:vector ratio may not be optimal. The ideal ratio for each insert to a vector can vary. For example, the Control Insert DNA works well at a 1:1 ratio, but another insert may be ligated more efficiently at a 3:1 ratio. Check the integrity and quantity of your PCR fragment by gel analysis. Optimize the insert:vector ratio (see Technical Manual #TM042).

Multiple PCR products were amplified and cloned into the pGEM®-T or pGEM®-T Easy Vector. Other amplification products including primer dimers will compete for ligation into the T vector, decreasing the possibility that the desired insert will be cloned. To minimize other competing products, gel purify the PCR fragment of interest.

Promega Technical Services Scientists are here to assist you in troubleshooting your experiments at any time. Contact Technical Services.

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Tips for Multiplex Cell-Based Assay Success

Performing a multiplex cell based assay save you time and help you get the most from your critical samples.
Analyzing more than one biomarker can save you time and help you get the most from your critical samples.

Analyzing more than one cellular biomarker (multiplexing) in a single sample is advantageous for a number of reasons. Multiplexing allows researchers to save money and time, while conserving critical samples. In addition, understanding the relationship between cell biomarkers can provide a more complete picture of cell health, leading to improved predictive models for drug discovery. Understanding biomarker relationships can also minimize ambiguity in the data set and validate if a treatment effect is real or an artifact of the system. To avoid repeat experiments and extract the most physiologically relevant data from multiplex cell-based assays, we discuss considerations around assay choices, cell type, cell culture, treatment parameters, detection and appropriate experimental controls.

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Top 10 Things to Do When You (or Your Kids) Have Too Much Halloween Candy

Halloween party with children wearing fancy costumes

 

10. Set a daily limit. (An ounce of prevention is worth a pound of cure.) Allow X number of pieces of candy per day, then put the bag away, under lock and key.

9. Parental help (good for the child, not so good for the parent). In my childhood, though it was not apparent at the time, Dad was helping by eating some of the candy. Many Promega parents engage in this practice with their children now.

8. Burn more energy. Go for a run or walk or outside to play. For every X pieces of candy, a walk or bike ride around the block. Continue reading “Top 10 Things to Do When You (or Your Kids) Have Too Much Halloween Candy”

Top Ten Uses for Pumpkin

In honor of Halloween, here is a Top Ten Uses of Pumpkin list for your enjoyment:

10. Means of transportation on the high seas or emergency flotation device (pumpkin boats; see the video).

9. Elementary Math Lessons. Determine circumference and radius. How much does a pumpkin weigh? Estimate the number of seeds. Check out pumpkin math ideas here.

8. Cholesterol-lowering snack. After ruthlessly scooping out the innards of a pumpkin, clean the seeds, bake them in the oven and enjoy your healthy snack. Pumpkin seeds contain phytosterols, compounds that that have been shown to reduce levels of LDL cholesterol, as well as magnesium, a mineral needed in the diet.

7. Physics Laboratory. Pumpkin Chuckin’ Contest (video).

Continue reading “Top Ten Uses for Pumpkin”

Cell-Free Protein Synthesis

Cell-free protein synthesis (aka: in vitro translation) refers to protein production in vitro using lysates that provide the cellular machinery necessary for synthesis. Ribosomes, tRNAs, aminoacyl-tRNA synthetases, initiation/elongation/termination factors, GTP, ATP, Mg2+ and K+ are among the requirements for a translation system. These are provided by lysates, which can be from prokaryotic or eukaryotic sources, depending on your requirements.

Cell-free protein synthesis is most commonly used for generating protein for study of things like:

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